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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
7
single cell RNA-seq
Assay category
134
Transcription
47
DNA binding
24
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Date released
69
May, 2021
44
February, 2021
6
July, 2018
5
October, 2019
4
March, 2020
4
May, 2020
1
June, 2018
1
November, 2019
Available data
134
bam
134
bigWig
134
tsv
7
fastq
Organism
134
Homo sapiens
Biosample type
87
in vitro differentiated cells
36
cell line
11
primary cell
Organ
38
pancreas
35
epithelium
3
kidney
2
embryo
Project
128
AMP
6
T1D
Genome assembly (visualization)
134
GRCh38
134
hg19
Lab
130
AMP-T2D consortium
4
Kyle Gaulton, UCSD
Audit category:
134
inconsistent ontology term
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
cardiomyocytes (cardiac muscle cell)
3
intermediate cardiomyocytes
1
intermediate endothelial cell
1
+ See 4 more…
cell line
EndoC_BH1
33
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
primary cell
central memory CD8-positive, alpha-beta T cell
2
co-expressing pancreatic endocrine cell
2
naive B cel
2
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
+ See 1 more…
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