Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
56
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
165
Transcription
88
DNA binding
39
DNA accessibility
1
3D chromatin structure
Date released
51
May, 2021
47
September, 2023
45
May, 2020
9
April, 2020
5
February, 2023
4
March, 2020
4
March, 2023
Available data
98
bam
98
bigWig
98
tsv
Organism
161
Homo sapiens
Biosample type
96
primary cell
63
tissue
4
cell line
2
stem cell
Organ
47
kidney
9
lung
9
pancreas
2
epithelium
Project
AMP
HPAP
105
T1D
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
101
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
award.project!
AMP
HPAP
BIOSAMPLE
ASSAY
165 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
tissue
kidney
47
lung
9
islet of Langerhans
7
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
See all biosamples
Download