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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
261
single cell RNA-seq
241
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
527
DNA binding
506
Transcription
366
DNA accessibility
80
DNA methylation
28
3D chromatin structure
1
DNA sequencing
Date released
165
August, 2021
90
February, 2023
60
May, 2022
56
September, 2020
47
September, 2023
25
February, 2020
18
February, 2021
14
October, 2019
9
April, 2020
4
July, 2018
4
March, 2023
4
May, 2021
3
May, 2023
2
March, 2020
2
May, 2020
1
December, 2019
1
November, 2018
1
September, 2018
Available data
142
tsv
134
fastq
72
txt
52
zippedFastqFolder
8
csv
6
bam
2
bed bed3+
2
bigWig
Organism
502
Homo sapiens
Biosample type
309
tissue
184
primary cell
11
cell line
in vitro differentiated cells
2
stem cell
Organ
113
kidney
96
heart
73
pancreas
55
epithelium
31
liver
19
eye
12
brain
9
blood vessel
9
lung
9
vasculature
4
artery
4
bone element
4
skeleton
3
limb
3
musculature of body
2
adipose tissue
2
connective tissue
1
nerve
1
spinal cord
Project
262
AMP
177
HPAP
47
KPMP
9
LungMap
7
T1D
4
community
Genome assembly (visualization)
1276
hg19
GRCh38
Lab
177
Klaus Kaestner, Upenn
165
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
14
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
5
audit script error
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
assembly!
GRCh38
BIOSAMPLE
ASSAY
506 results
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single cell RNA-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
64
49
islet of Langerhans
32
liver
1
20
heart left ventricle
18
left cardiac atrium
18
+ See 45 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
2
+ See 4 more…
cell line
HepG2
9
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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