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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
476
DNA binding
37
Transcription
22
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
February, 2021
17
August, 2021
5
January, 2019
4
March, 2020
4
May, 2021
4
October, 2019
2
March, 2023
1
November, 2019
Available data
35
tsv
26
bam
26
bigWig
5
fastq
Organism
35
Homo sapiens
Biosample type
777
tissue
423
primary cell
116
in vitro differentiated cells
37
cell line
2
stem cell
Organ
14
liver
8
embryo
8
epithelium
7
pancreas
4
kidney
Project
33
AMP
2
T1D
2
community
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
26
AMP-T2D consortium
9
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
10
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
37 results
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total RNA-seq
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
14
H1-hESC
8
EndoC_BH1
7
EndoC-BH1
1
1
early embryonic cell
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
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