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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
100
single cell RNA-seq
2
small RNA-seq
Assay category
254
Transcription
247
DNA binding
108
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
54
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
18
July, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
February, 2021
Available data
254
bigWig
252
bam
252
tsv
248
fastq
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
254
Homo sapiens
Biosample type
917
tissue
254
primary cell
127
in vitro differentiated cells
104
cell line
Organ
110
epithelium
102
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
158
AMP
96
T1D
Genome assembly (visualization)
254
hg19
252
GRCh38
Lab
156
AMP-T2D consortium
98
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
254 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
pancreatic polypeptide-secreting cell
9
pancreatic cell
7
mesenchymal cell
6
hepatocyte
5
osteoblast
5
CD8-positive, alpha-beta T cell
4
pancreatic stellate cell
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellar granule cell
2
co-expressing pancreatic endocrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell
2
enteroendocrine cell
2
gamma-delta T cell
2
mast cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell of adipose
1
1
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
pancreatic epsilon cell
2
regulatory T cell
2
skeletal muscle satellite cell
1
1
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
Purkinje cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
embryonic stem cell
1
endothelial cell of coronary artery
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
immature natural killer cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
mesangial cell
1
myeloid dendritic cell
1
natural killer cell
1
pericardium fibroblast
1
plasma cell
1
plasmacytoid dendritic cell
1
renal cortical epithelial cell
1
skeletal muscle myoblast
1
smooth muscle cell of the coronary artery
1
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