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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
152
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
344
Transcription
229
DNA accessibility
47
DNA methylation
41
DNA binding
8
3D chromatin structure
1
DNA sequencing
Date released
81
February, 2023
67
August, 2021
59
May, 2022
56
September, 2020
47
September, 2023
12
February, 2021
9
April, 2020
6
May, 2021
4
March, 2023
3
May, 2023
Available data
132
fastq
106
tsv
102
bam
bigWig
63
txt
52
zippedFastqFolder
2
bed bed3+
Organism
340
Homo sapiens
Biosample type
177
primary cell
149
tissue
11
cell line
5
in vitro differentiated cells
2
stem cell
Organ
107
kidney
66
pancreas
53
epithelium
29
liver
9
lung
Project
177
HPAP
102
AMP
47
KPMP
9
LungMap
5
T1D
4
community
Lab
177
Klaus Kaestner, Upenn
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
344 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
tissue
kidney
49
58
liver
20
islet of Langerhans
12
lung
9
pancreas
1
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
1
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