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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1336
total RNA-seq
355
single cell RNA-seq
18
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
1713
Transcription
1534
DNA binding
733
DNA accessibility
95
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Target of assay
3
control
Date released
489
February, 2021
190
May, 2020
168
July, 2018
167
August, 2021
98
May, 2021
90
February, 2023
89
August, 2017
60
July, 2019
60
May, 2022
56
September, 2020
49
April, 2018
47
September, 2023
28
October, 2019
27
September, 2018
22
February, 2020
20
November, 2019
12
March, 2020
9
April, 2020
6
December, 2019
5
January, 2019
4
March, 2023
4
May, 2023
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
1348
tsv
1221
bam
1217
bigWig
356
fastq
72
txt
52
zippedFastqFolder
8
csv
2
bed bed3+
Organism
1709
Homo sapiens
Biosample type
1214
tissue
434
primary cell
in vitro differentiated cells
63
cell line
2
stem cell
Organ
479
pancreas
472
connective tissue
401
adipose tissue
199
epithelium
193
liver
165
heart
125
kidney
blood vessel
67
vasculature
62
bone element
58
artery
24
brain
19
eye
9
lung
9
musculature of body
8
embryo
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
1371
AMP
177
HPAP
105
T1D
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
1218
hg19
1216
GRCh38
Lab
1276
AMP-T2D consortium
177
Klaus Kaestner, Upenn
110
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
48
inconsistent ontology term
5
audit script error
organ_slims!
blood vessel
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1713 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue
382
islet of Langerhans
298
liver
167
1
1
kidney
49
64
bone tissue
58
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primary cell
Langerhans cell
85
pancreatic alpha cell
52
12
monocyte
54
exocrine cell
39
pancreatic beta cell
21
12
+ See 58 more…
cell line
EndoC_BH1
33
HepG2
14
H1-hESC
8
EndoC-BH1
1
1
early embryonic cell
2
+ See 4 more…
stem cell
SB Ad3.1
1
1
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