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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
117
single cell RNA-seq
2
small RNA-seq
Assay category
273
Transcription
197
DNA accessibility
187
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
3
control
Date released
55
May, 2021
47
May, 2020
40
September, 2020
39
February, 2023
33
May, 2022
15
July, 2018
13
February, 2021
13
July, 2019
10
April, 2018
4
November, 2020
2
June, 2018
1
November, 2018
1
September, 2018
Available data
144
bigWig
142
bam
142
tsv
101
fastq
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
273
Homo sapiens
Biosample type
1225
tissue
273
primary cell
136
in vitro differentiated cells
81
cell line
2
stem cell
Organ
epithelium
155
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
124
HPAP
96
T1D
53
AMP
Genome assembly (visualization)
144
hg19
142
GRCh38
Lab
124
Klaus Kaestner, Upenn
98
Kyle Gaulton, UCSD
51
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
273 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
Langerhans cell
85
monocyte
54
exocrine cell
39
pancreatic cell
9
mesenchymal cell
6
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