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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
1
single cell RNA-seq
Assay category
105
DNA accessibility
105
Transcription
10
3D chromatin structure
3
DNA binding
Date released
563
February, 2021
190
May, 2020
182
May, 2021
180
August, 2021
168
July, 2018
90
February, 2023
89
August, 2017
65
July, 2019
60
May, 2022
56
September, 2020
49
April, 2018
47
September, 2023
30
October, 2019
27
September, 2018
25
February, 2020
20
November, 2019
15
February, 2018
15
March, 2020
9
April, 2020
8
December, 2019
5
January, 2019
4
March, 2023
4
May, 2023
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
76
fastq
17
tsv
13
bam
13
bigWig
Organism
105
Homo sapiens
Biosample type
76
primary cell
19
tissue
6
in vitro differentiated cells
4
cell line
Organ
47
pancreas
41
epithelium
4
bone element
4
connective tissue
4
eye
skeleton
3
heart
2
musculature of body
1
blood vessel
1
liver
1
vasculature
Project
76
HPAP
20
AMP
9
T1D
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
76
Klaus Kaestner, Upenn
24
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
skeleton
BIOSAMPLE
ASSAY
105 results
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total RNA-seq
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
7
pigmented layer of retina
2
psoas muscle
2
retina
2
aorta
1
+ See 5 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
preadipocyte
1
cell line
EndoC_BH1
2
early embryonic cell
2
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