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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
3
small RNA-seq
Assay category
401
Transcription
73
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
50
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
May, 2023
Available data
435
bam
417
bigWig
400
tsv
37
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
1
bed broadPeak
Organism
474
Homo sapiens
Biosample type
472
tissue
2
primary cell
Organ
745
liver
697
pancreas
634
connective tissue
474
adipose tissue
330
epithelium
260
heart
242
brain
177
kidney
169
vasculature
166
blood vessel
92
artery
73
limb
62
bone element
60
blood
60
bodily fluid
48
musculature of body
40
nerve
36
embryo
24
eye
20
spleen
17
vein
9
lung
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pericardium
1
pituitary gland
1
spinal cord
Project
474
AMP
Genome assembly (visualization)
418
hg19
417
GRCh38
Lab
474
AMP-T2D consortium
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
474 results
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total RNA-seq
ChIP-seq
small RNA-seq
tissue
adipose tissue
382
2
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
omental fat pad
5
11
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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