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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
total RNA-seq
77
single cell RNA-seq
6
small RNA-seq
Assay category
503
Transcription
436
DNA binding
210
DNA accessibility
55
DNA methylation
12
3D chromatin structure
Target of assay
3
control
Date released
157
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
39
April, 2018
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
15
July, 2019
13
February, 2020
6
May, 2022
5
March, 2020
3
August, 2018
2
October, 2018
1
August, 2021
1
June, 2018
1
October, 2019
Available data
432
tsv
424
bam
418
bigWig
253
fastq
6
txt
Organism
503
Homo sapiens
Biosample type
312
tissue
158
primary cell
33
cell line
Organ
481
connective tissue
479
pancreas
401
adipose tissue
201
epithelium
193
liver
166
heart
125
kidney
67
blood vessel
67
vasculature
62
bone element
58
artery
24
brain
19
eye
14
embryo
9
lung
9
musculature of body
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
441
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
418
GRCh38
418
hg19
Lab
437
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
BIOSAMPLE
ASSAY
503 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
islet of Langerhans
284
body of pancreas
3
2
frontal cortex
2
1
cerebellum
2
cerebellum (Hemisphere)
1
1
+ See 13 more…
primary cell
pancreatic alpha cell
52
12
pancreatic beta cell
21
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 6 more…
cell line
EndoC_BH1
33
See all biosamples
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