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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ATAC-seq
5
ChIP-seq
Assay category
8
DNA accessibility
5
DNA binding
Target of assay
3
transcription factor
2
histone
2
histone modification
2
narrow histone mark
Date released
5
November, 2019
3
May, 2021
2
December, 2017
2
October, 2019
1
February, 2023
Available data
101
bam
93
bigWig
90
tsv
13
bed narrowPeak
6
bedpe bed3+
4
fastq
4
hic
3
tagAlign
2
bed bed3+
2
ibed
1
bed bedgraph
1
txt
Organism
13
Homo sapiens
Biosample type
25
primary cell
21
cell line
13
in vitro differentiated cells
4
tissue
Organ
2
embryo
2
epithelium
Project
13
AMP
Genome assembly (visualization)
13
hg19
12
GRCh38
Lab
12
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
13 results
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ATAC-seq
ChIP-seq
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes
3
Hepatic endoderm
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
neuron cell of Hypothalamus (neuron)
1
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