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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
28
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
33
Transcription
28
DNA binding
20
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
10
broad histone mark
9
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
15
October, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
Available data
63
bam
56
bigWig
34
tsv
21
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
91
Homo sapiens
Biosample type
503
tissue
346
primary cell
92
cell line
3
in vitro differentiated cells
Organ
400
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
88
AMP
4
T1D
Genome assembly (visualization)
58
hg19
55
GRCh38
Lab
86
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
small RNA-seq
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
33
15
19
6
2
1
1
Panc1
13
1
1
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