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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
411
ChIP-seq
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
411
DNA binding
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
57
November, 2018
27
December, 2018
16
October, 2019
15
January, 2019
14
August, 2021
11
November, 2019
5
February, 2021
3
March, 2020
1
January, 2018
1
May, 2021
Available data
478
bam
422
fastq
418
bigWig
404
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
418
Homo sapiens
Biosample type
832
tissue
461
primary cell
418
cell line
132
in vitro differentiated cells
3
stem cell
Organ
327
liver
55
blood
55
bodily fluid
23
pancreas
16
epithelium
8
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
Project
416
AMP
2
T1D
Genome assembly (visualization)
413
hg19
350
GRCh38
Lab
404
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
22
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
total RNA-seq
month_released!
October, 2018
BIOSAMPLE
ASSAY
418 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
1
GM12878
54
1
EndoC_BH1
13
2
Panc1
6
1
1
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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