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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
17
ATAC-seq
total RNA-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
47
DNA binding
18
DNA accessibility
Target of assay
37
histone
37
histone modification
22
transcription factor
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
48
August, 2017
9
February, 2023
4
August, 2021
4
February, 2021
2
October, 2019
1
August, 2018
Available data
43
fastq
42
bam
40
bigWig
33
bed narrowPeak
13
bed bed3+
6
tagAlign
5
bed bed3
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
68
Homo sapiens
Biosample type
72
tissue
68
in vitro differentiated cells
25
primary cell
1
stem cell
Organ
68
connective tissue
19
embryo
15
epithelium
8
liver
3
pancreas
1
adipose tissue
Project
68
AMP
Genome assembly (visualization)
56
hg19
37
GRCh38
Lab
64
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
total RNA-seq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
ATAC-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
47
8
1
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
preadipocyte
1
white fat cell
1
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