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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
19
ATAC-seq
15
ChIP-seq
3
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
20
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
17
May, 2021
15
November, 2019
3
March, 2020
3
November, 2020
2
August, 2021
1
February, 2023
1
October, 2019
Available data
17
bam
16
bigWig
15
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
1
tsv
Organism
41
Homo sapiens
Biosample type
313
primary cell
42
cell line
22
in vitro differentiated cells
13
tissue
Organ
387
liver
61
blood
61
bodily fluid
56
pancreas
42
epithelium
15
kidney
14
artery
14
blood vessel
14
heart
14
vasculature
1
mammary gland
Project
40
AMP
2
T1D
Genome assembly (visualization)
18
hg19
15
GRCh38
Lab
39
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
40
inconsistent ontology term
assay_title!
total RNA-seq
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
42 results
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ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
19
15
3
2
1
1
glomerular visceral epithelial cell
1
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