Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
94
DNA binding
30
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
57
April, 2019
35
June, 2019
21
May, 2019
10
July, 2019
6
February, 2021
6
October, 2019
5
March, 2020
Available data
129
bam
110
bigWig
104
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
140
Homo sapiens
Biosample type
125
tissue
9
primary cell
6
cell line
Organ
575
liver
315
pancreas
258
brain
220
epithelium
178
connective tissue
154
kidney
140
heart
123
vasculature
117
blood vessel
107
limb
86
musculature of body
85
bone element
84
adipose tissue
68
blood
68
bodily fluid
38
artery
37
nerve
24
spleen
23
embryo
22
vein
18
ureter
14
eye
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
109
GRCh38
106
hg19
Lab
140
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
ATAC-seq
assay_slims!
Transcription
BIOSAMPLE
ASSAY
140 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
3
4
1
1
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
right atrium auricular region
10
2
right cardiac atrium
6
1
1
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
cell line
smooth muscle cell of the coronary artery
6
See all biosamples
Download