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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
243
total RNA-seq
128
single cell RNA-seq
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
371
Transcription
41
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
101
August, 2017
76
February, 2023
50
July, 2018
45
February, 2021
44
April, 2018
38
September, 2020
27
September, 2018
18
November, 2018
15
February, 2018
6
May, 2022
5
January, 2018
5
January, 2019
4
August, 2018
3
June, 2018
2
October, 2018
1
December, 2018
Available data
1643
bigWig
1639
bam
1586
tsv
440
fastq
216
bed bed3+
214
bed narrowPeak
214
bigBed narrowPeak
206
bed broadPeak
206
bigBed broadPeak
158
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
440
Homo sapiens
Biosample type
283
primary cell
128
tissue
21
in vitro differentiated cells
7
cell line
1
stem cell
Organ
268
pancreas
153
epithelium
12
liver
9
connective tissue
5
adipose tissue
5
embryo
3
spleen
2
brain
2
musculature of body
Project
281
AMP
159
HPAP
Genome assembly (visualization)
257
GRCh38
255
hg19
5
hg18
Lab
275
AMP-T2D consortium
159
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
Audit category:
27
audit script error
7
inconsistent ontology term
assay_title!
ATAC-seq
ChIP-seq
BIOSAMPLE
ASSAY
440 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
52
12
6
Langerhans cell
34
27
exocrine cell
39
pancreatic beta cell
21
12
pancreatic acinar cell
4
9
+ See 14 more…
tissue
islet of Langerhans
103
1
1
body of pancreas
2
2
liver
1
2
1
adipose tissue
3
pancreas
2
1
+ See 5 more…
in vitro differentiated cells
pancreatic endoderm
4
1
definitive endodermal cell
2
1
primitive gut cell
2
1
embryonic stem cell
2
endocrine cell
2
+ See 5 more…
cell line
HepG2
5
1
1
stem cell
hESC
1
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