Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
ATAC-seq
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
138
Transcription
4
3D chromatin structure
1
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
43
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
4
February, 2023
4
January, 2018
4
March, 2020
4
October, 2019
2
December, 2019
Available data
274
bam
247
bigWig
140
fastq
129
tsv
111
bed narrowPeak
40
tagAlign
21
bed bed3+
15
bigBed narrowPeak
4
bedpe bed3+
4
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
347
Homo sapiens
Biosample type
2452
tissue
871
primary cell
627
cell line
347
in vitro differentiated cells
6
stem cell
Organ
79
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
347
AMP
Genome assembly (visualization)
253
hg19
248
GRCh38
4
hg18
Lab
303
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
ATAC-seq
pCHi-C
BIOSAMPLE
ASSAY
347 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
+ See 26 more…
See all biosamples
Download