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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
19
total RNA-seq
5
ChIP-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
19
Transcription
5
DNA binding
4
DNA accessibility
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
20
October, 2019
7
June, 2019
4
February, 2023
1
February, 2020
1
July, 2019
Available data
7
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
33
Homo sapiens
Biosample type
28
tissue
5
primary cell
Organ
767
liver
720
pancreas
655
connective tissue
485
adipose tissue
351
epithelium
279
brain
215
kidney
213
heart
184
vasculature
178
blood vessel
147
bone element
114
limb
94
artery
94
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
18
ureter
11
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
33
AMP-T2D consortium
assay_title!
ATAC-seq
single cell RNA-seq
BIOSAMPLE
ASSAY
33 results
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total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
14
2
4
retina
3
3
pigmented layer of retina
2
primary cell
retinal pigment epithelial cell
3
1
1
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