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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
109
total RNA-seq
18
snATAC-seq
17
pCHi-C
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
109
Transcription
18
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
230
May, 2021
45
May, 2020
16
January, 2021
12
February, 2023
Available data
215
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
fastq
6
txt
2
bed bed3+
Organism
303
Homo sapiens
Biosample type
239
primary cell
42
in vitro differentiated cells
17
tissue
5
cell line
Organ
16
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
225
T1D
78
AMP
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
2419
AMP-T2D consortium
303
Kyle Gaulton, UCSD
116
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
small RNA-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
303 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
5
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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