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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
47
Transcription
27
DNA methylation
8
3D chromatin structure
2
DNA accessibility
Target of assay
3
control
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
December, 2017
88
November, 2018
84
July, 2019
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
61
bigWig
58
bam
47
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
2
bed narrowPeak
2
bigBed narrowPeak
Organism
84
Homo sapiens
Biosample type
55
tissue
29
primary cell
Organ
20
heart
15
connective tissue
13
brain
13
epithelium
10
kidney
10
vasculature
9
adipose tissue
9
blood vessel
8
musculature of body
7
liver
5
limb
4
pancreas
2
artery
2
pericardium
1
eye
Project
84
AMP
Genome assembly (visualization)
68
hg19
55
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
small RNA-seq
month_released!
December, 2017
BIOSAMPLE
ASSAY
84 results
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total RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
gastrocnemius medialis
4
omental fat pad
4
subcutaneous adipose tissue
4
heart
2
1
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
Purkinje cell
1
+ See 20 more…
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