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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
99
total RNA-seq
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
106
DNA binding
101
Transcription
2
3D chromatin structure
2
DNA accessibility
Target of assay
64
transcription factor
23
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
7
recombinant protein
3
nucleotide modification
Date released
86
February, 2021
30
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
15
November, 2019
13
August, 2021
9
March, 2020
6
February, 2023
6
November, 2020
5
May, 2021
2
March, 2023
1
October, 2022
Available data
207
bam
187
bigWig
103
tsv
87
bed narrowPeak
62
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
229
Homo sapiens
Biosample type
2164
tissue
873
primary cell
337
in vitro differentiated cells
233
cell line
10
stem cell
Organ
liver
73
pancreas
60
blood
60
bodily fluid
60
epithelium
58
artery
58
blood vessel
58
heart
58
vasculature
19
kidney
8
embryo
1
mammary gland
Project
222
AMP
9
T1D
2
community
Genome assembly (visualization)
188
hg19
187
GRCh38
Lab
217
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
73
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
assay_title!
ATAC-seq
small RNA-seq
organ_slims!
liver
BIOSAMPLE
ASSAY
233 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
15
33
6
3
2
1
2
1
GM12878
60
smooth muscle cell of the coronary artery
6
52
Panc1
13
1
1
H1-hESC
8
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