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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
93
single cell RNA-seq
total RNA-seq
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
134
DNA binding
94
Transcription
30
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
35
June, 2019
21
May, 2019
11
July, 2019
6
February, 2021
6
October, 2019
5
March, 2020
1
February, 2023
Available data
151
bigWig
144
bed narrowPeak
130
bam
96
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
274
Homo sapiens
Biosample type
259
tissue
9
primary cell
6
cell line
Organ
579
liver
391
pancreas
290
epithelium
274
heart
265
brain
219
kidney
185
connective tissue
129
vasculature
123
blood vessel
107
limb
89
musculature of body
87
adipose tissue
85
bone element
68
blood
68
bodily fluid
40
artery
37
nerve
24
spleen
23
embryo
22
vein
20
lung
18
ureter
14
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
274
AMP
Genome assembly (visualization)
150
GRCh38
107
hg19
Lab
234
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_title!
ATAC-seq
total RNA-seq
BIOSAMPLE
ASSAY
274 results
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ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
4
1
1
1
left cardiac atrium
40
18
1
heart
14
1
18
1
1
1
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
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primary cell
cardiac fibroblast
5
3
1
cell line
smooth muscle cell of the coronary artery
6
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