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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
ATAC-seq
5
FAIRE-seq
2
DNase-seq
Assay category
108
DNA binding
7
DNA accessibility
Target of assay
64
histone
64
histone modification
44
transcription factor
33
broad histone mark
31
narrow histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
33
November, 2017
30
May, 2021
24
August, 2017
14
August, 2021
8
May, 2020
2
July, 2019
1
April, 2019
1
May, 2019
1
November, 2018
1
October, 2019
Available data
388
fastq
369
bam
186
tsv
158
txt
154
bigWig
152
tagAlign
115
bed narrowPeak
114
zippedFastqFolder
41
bigBed narrowPeak
39
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
11
bed bed3+
8
csv
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
115
Homo sapiens
Biosample type
46
cell line
35
tissue
34
primary cell
Organ
54
liver
14
musculature of body
8
pancreas
2
brain
1
adipose tissue
1
blood vessel
1
connective tissue
1
epithelium
1
heart
1
kidney
1
limb
1
vasculature
1
vein
Project
115
AMP
Genome assembly (visualization)
1419
hg19
GRCh38
Lab
71
AMP-T2D consortium
30
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assay_title!
ATAC-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
FAIRE-seq
DNase-seq
cell line
HepG2
46
tissue
skeletal muscle tissue
13
liver
8
islet of Langerhans
6
1
cingulate gyrus
1
frontal cortex
1
+ See 5 more…
primary cell
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
See all biosamples
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