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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
23
DNA binding
9
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
July, 2019
1
June, 2019
1
March, 2020
Available data
26
bam
10
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
36
Homo sapiens
Biosample type
28
tissue
6
primary cell
2
cell line
Organ
207
pancreas
170
heart
166
liver
150
kidney
148
epithelium
119
brain
95
connective tissue
89
bone element
65
adipose tissue
36
blood vessel
36
vasculature
26
eye
26
limb
23
musculature of body
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
hg19
141
GRCh38
Lab
36
AMP-T2D consortium
assay_title!
ATAC-seq
assembly!
hg19
month_released!
April, 2020
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
aorta
2
4
2
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
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primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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