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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
21
total RNA-seq
5
WGBS
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
Assay category
118
DNA binding
22
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
Target of assay
89
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
August, 2021
13
December, 2017
4
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
95
bam
75
fastq
43
tagAlign
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
149
Homo sapiens
Biosample type
93
tissue
55
cell line
1
in vitro differentiated cells
Organ
203
pancreas
149
liver
145
epithelium
119
brain
94
connective tissue
89
bone element
85
kidney
78
heart
64
adipose tissue
30
blood vessel
30
vasculature
26
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
artery
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
AMP
Genome assembly (visualization)
hg19
525
GRCh38
Lab
129
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
assembly!
hg19
month_released!
August, 2021
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
total RNA-seq
WGBS
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
tissue
liver
62
20
3
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
52
1
1
1
in vitro differentiated cells
hepatocyte
1
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