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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
12
total RNA-seq
10
DNase-seq
ATAC-seq
2
pCHi-C
Assay category
95
DNA binding
12
Transcription
10
DNA accessibility
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
control
25
narrow histone mark
Date released
76
November, 2017
12
February, 2020
10
June, 2019
9
October, 2017
7
October, 2019
3
May, 2019
2
March, 2020
Available data
86
bam
75
tagAlign
62
bed narrowPeak
62
bigBed narrowPeak
61
bigWig
14
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
3
fastq
Organism
119
Homo sapiens
Biosample type
119
tissue
Organ
170
heart
160
pancreas
150
kidney
146
liver
119
brain
107
epithelium
95
connective tissue
89
bone element
65
adipose tissue
36
blood vessel
36
vasculature
26
eye
26
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
119
AMP
Genome assembly (visualization)
215
GRCh38
hg19
Lab
119
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
assembly!
hg19
month_released!
May, 2022
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
layer of hippocampus
22
caudate nucleus
14
1
1
substantia nigra
14
1
cingulate gyrus
12
middle frontal area 46
12
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