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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
60
ChIP-seq
ATAC-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
Assay category
96
Transcription
60
DNA binding
8
DNA methylation
3
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
3
February, 2020
3
March, 2020
2
February, 2021
1
February, 2023
Available data
98
tsv
49
bigWig
43
bed narrowPeak
29
bam
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
170
Homo sapiens
Biosample type
165
tissue
3
primary cell
2
cell line
Organ
207
pancreas
170
heart
166
liver
150
kidney
148
epithelium
119
brain
95
connective tissue
89
bone element
65
adipose tissue
36
blood vessel
36
vasculature
26
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
170
AMP
Genome assembly (visualization)
219
GRCh38
hg19
Lab
130
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
assembly!
hg19
BIOSAMPLE
ASSAY
170 results
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single cell RNA-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
tissue
left cardiac atrium
18
40
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
heart
1
2
1
2
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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