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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
590
ChIP-seq
177
DNase-seq
ATAC-seq
16
WGBS
16
small RNA-seq
Assay category
918
Transcription
590
DNA binding
177
DNA accessibility
16
DNA methylation
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
163
June, 2019
162
May, 2020
159
October, 2019
156
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
57
November, 2017
55
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
22
November, 2018
19
November, 2019
9
March, 2020
6
April, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
September, 2017
1
May, 2023
Available data
1694
bigWig
1658
bam
917
tsv
741
bed narrowPeak
553
bigBed narrowPeak
270
fastq
204
bed bed3+
190
bed broadPeak
176
bigBed broadPeak
116
tagAlign
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1695
Homo sapiens
Biosample type
1701
tissue
487
primary cell
454
cell line
248
in vitro differentiated cells
3
stem cell
Organ
477
connective tissue
419
adipose tissue
360
pancreas
237
liver
201
brain
152
heart
90
kidney
88
limb
67
blood vessel
67
vasculature
58
bone element
42
musculature of body
30
nerve
25
artery
18
ureter
15
spleen
3
eye
1
pituitary gland
Project
1699
AMP
2
T1D
Genome assembly (visualization)
1701
GRCh38
1633
hg19
Lab
1661
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
assembly!
hg18
BIOSAMPLE
ASSAY
1701 results
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total RNA-seq
ChIP-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
1
liver
147
75
2
1
bone tissue
58
left cardiac atrium
40
1
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