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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
159
total RNA-seq
5
DNase-seq
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
360
DNA binding
162
Transcription
5
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
41
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
162
May, 2020
52
November, 2018
50
December, 2017
18
August, 2017
7
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
March, 2020
Available data
528
bam
527
bigWig
364
bed narrowPeak
342
fastq
325
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
528
Homo sapiens
Biosample type
267
cell line
237
tissue
14
in vitro differentiated cells
10
primary cell
Organ
576
pancreas
561
connective tissue
528
liver
421
adipose tissue
260
epithelium
219
heart
215
brain
145
vasculature
141
blood vessel
130
kidney
88
limb
83
artery
58
bone element
54
blood
54
bodily fluid
53
musculature of body
30
nerve
29
embryo
18
ureter
15
spleen
12
vein
6
eye
1
pericardium
1
pituitary gland
Project
528
AMP
Genome assembly (visualization)
602
hg19
528
GRCh38
Lab
528
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
assay_title!
ATAC-seq
assembly!
hg18
BIOSAMPLE
ASSAY
528 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
WGBS
cell line
HepG2
261
5
1
tissue
liver
75
147
2
1
right lobe of liver
7
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
hepatic stellate cell
1
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