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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
302
ChIP-seq
5
total RNA-seq
Assay category
302
DNA binding
5
Transcription
Target of assay
252
transcription factor
65
recombinant protein
40
RNA binding protein
31
histone
31
histone modification
21
chromatin remodeller
17
narrow histone mark
16
control
14
broad histone mark
2
other context
2
other post-translational modification
Date released
552
February, 2021
298
May, 2021
281
November, 2017
271
August, 2017
215
May, 2020
208
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
86
July, 2019
77
December, 2017
71
November, 2018
65
April, 2019
58
September, 2018
49
April, 2018
48
August, 2021
47
October, 2018
33
November, 2019
31
February, 2018
30
December, 2018
28
March, 2020
26
January, 2019
6
October, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
September, 2017
1
March, 2019
1
May, 2022
1
May, 2023
Available data
307
bigWig
306
bam
301
fastq
280
bed narrowPeak
279
bigBed narrowPeak
70
bed broadPeak
64
bigBed broadPeak
18
tagAlign
5
tsv
3
tar
Organism
307
Homo sapiens
Biosample type
286
cell line
12
tissue
9
primary cell
Organ
271
liver
15
blood
15
bodily fluid
15
brain
6
epithelium
6
spleen
6
vasculature
3
blood vessel
Project
307
AMP
Genome assembly (visualization)
307
hg19
306
GRCh38
Lab
307
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
307 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
266
5
GM12878
15
tissue
spleen
6
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
substantia nigra
1
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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