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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
136
total RNA-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
192
DNA binding
138
Transcription
4
3D chromatin structure
1
DNA accessibility
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
63
August, 2017
42
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
268
bam
242
bigWig
135
fastq
131
tsv
111
bed narrowPeak
40
tagAlign
21
bed bed3+
15
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
346
Homo sapiens
Biosample type
2451
tissue
844
primary cell
620
cell line
346
in vitro differentiated cells
10
stem cell
Organ
75
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
346
AMP
Genome assembly (visualization)
250
hg19
243
GRCh38
4
hg18
Lab
302
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
ATAC-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
346 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
62
5
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
17
4
1
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