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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
Assay category
55
DNA binding
Target of assay
54
histone
54
histone modification
30
transcription factor
narrow histone mark
25
broad histone mark
1
RNA binding protein
1
chromatin remodeller
1
recombinant protein
Date released
28
August, 2017
17
September, 2018
6
November, 2017
3
October, 2017
1
November, 2018
Available data
55
fastq
54
bam
53
bigWig
25
bed narrowPeak
11
bed bed3+
8
bigBed narrowPeak
3
tagAlign
1
bed broadPeak
Organism
55
Homo sapiens
Biosample type
22
tissue
21
primary cell
7
cell line
5
in vitro differentiated cells
Organ
28
pancreas
17
connective tissue
12
adipose tissue
10
epithelium
7
liver
3
brain
Project
55
AMP
Genome assembly (visualization)
53
hg19
47
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
55
missing controlled_by
Audit category:
6
inconsistent control run_type
inconsistent control read length
assay_title!
ATAC-seq
target.investigated_as!
narrow histone mark
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
55 results
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Clear Filters
ChIP-seq
tissue
white adipose tissue
12
islet of Langerhans
7
brain
3
primary cell
pancreatic endocrine cell
11
pancreatic ductal cell
6
pancreatic acinar cell
4
cell line
HepG2
7
in vitro differentiated cells
adipocyte
5
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