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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
134
total RNA-seq
ATAC-seq
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
198
DNA binding
136
Transcription
2
3D chromatin structure
1
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
43
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
272
bam
245
bigWig
141
fastq
127
tsv
111
bed narrowPeak
40
tagAlign
21
bed bed3+
15
bigBed narrowPeak
3
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
344
Homo sapiens
Biosample type
2478
tissue
885
primary cell
623
cell line
344
in vitro differentiated cells
6
stem cell
Organ
80
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
344
AMP
Genome assembly (visualization)
249
hg19
246
GRCh38
4
hg18
Lab
300
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
98
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
ATAC-seq
audit.WARNING.category!
inconsistent assembly
month_released!
March, 2020
BIOSAMPLE
ASSAY
344 results
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ChIP-seq
total RNA-seq
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
5
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
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