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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
17
pCHi-C
ATAC-seq
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
18
DNA accessibility
7
Transcription
Date released
17
May, 2021
16
January, 2021
12
February, 2023
2
March, 2020
Available data
186
bam
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
47
Homo sapiens
Biosample type
24
primary cell
18
tissue
5
cell line
Organ
17
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
974
AMP
275
HPAP
47
KPMP
47
T1D
19
LungMap
4
community
1
ITG
Lab
45
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
47 results
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snATAC-seq
pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
6
7
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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