Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
174
ChIP-seq
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
174
DNA binding
6
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
53
August, 2017
20
May, 2022
10
July, 2019
7
November, 2018
6
October, 2019
5
December, 2019
4
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
313
bam
269
bigWig
159
tsv
111
bed narrowPeak
97
fastq
74
tagAlign
64
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
368
Homo sapiens
Biosample type
cell line
340
tissue
15
in vitro differentiated cells
13
primary cell
Organ
721
pancreas
659
connective tissue
485
adipose tissue
368
liver
361
epithelium
282
brain
260
kidney
248
heart
147
bone element
132
vasculature
126
blood vessel
114
limb
95
musculature of body
42
nerve
38
artery
33
eye
29
embryo
24
spleen
22
vein
20
lung
18
ureter
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
368
AMP
Genome assembly (visualization)
273
hg19
261
GRCh38
Lab
348
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_title!
ATAC-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
368 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
2
3
1
1
1
1
1
right lobe of liver
3
10
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download