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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
24
total RNA-seq
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
43
DNA binding
24
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
325
May, 2021
324
November, 2017
156
February, 2021
124
August, 2017
95
May, 2022
86
February, 2023
78
August, 2021
66
October, 2019
62
November, 2018
59
September, 2018
56
September, 2020
55
June, 2019
48
July, 2018
48
May, 2020
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
23
January, 2019
22
March, 2020
15
November, 2019
11
November, 2020
8
January, 2021
7
December, 2019
5
January, 2018
5
March, 2023
5
May, 2019
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
45
bigWig
39
bam
30
bed narrowPeak
24
tagAlign
24
tsv
5
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
78
Homo sapiens
Biosample type
tissue
44
cell line
30
in vitro differentiated cells
4
primary cell
Organ
35
liver
8
embryo
6
epithelium
2
connective tissue
2
kidney
2
pancreas
Project
78
AMP
Genome assembly (visualization)
47
hg19
31
GRCh38
Lab
42
AMP-T2D consortium
34
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
biosample_type!
tissue
BIOSAMPLE
ASSAY
78 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
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