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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
411
ChIP-seq
104
total RNA-seq
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
411
DNA binding
104
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
5
March, 2020
5
May, 2021
Available data
572
bam
519
bigWig
427
fastq
394
bed narrowPeak
355
bigBed narrowPeak
118
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
519
Homo sapiens
Biosample type
1689
tissue
535
primary cell
519
cell line
247
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
54
pancreas
48
epithelium
12
kidney
8
embryo
Project
515
AMP
4
T1D
Genome assembly (visualization)
514
hg19
454
GRCh38
Lab
505
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
56
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
519 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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