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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
134
total RNA-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
136
Transcription
2
3D chromatin structure
1
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
43
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
October, 2019
2
December, 2019
1
August, 2018
Available data
272
bam
245
bigWig
141
fastq
129
tsv
111
bed narrowPeak
40
tagAlign
21
bed bed3+
15
bigBed narrowPeak
5
bedpe bed3+
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
348
Homo sapiens
Biosample type
2251
tissue
856
primary cell
603
cell line
348
in vitro differentiated cells
10
stem cell
Organ
80
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
348
AMP
Genome assembly (visualization)
251
hg19
246
GRCh38
4
hg18
Lab
304
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
101
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
ATAC-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
348 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
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