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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
ATAC-seq
9
total RNA-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
67
DNA binding
9
Transcription
1
DNA accessibility
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
4
February, 2021
4
February, 2023
2
August, 2021
1
August, 2018
1
May, 2021
Available data
59
bam
55
fastq
53
bigWig
43
bed narrowPeak
14
tagAlign
9
bed bed3+
5
tsv
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
80
Homo sapiens
Biosample type
541
tissue
80
in vitro differentiated cells
37
primary cell
1
stem cell
Organ
80
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
80
AMP
Genome assembly (visualization)
56
hg19
54
GRCh38
Lab
78
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
total RNA-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
5
1
1
immature adipocyte
2
cardiac fibroblast
1
osteoblast
1
preadipocyte
1
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