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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
ATAC-seq
2
DNase-seq
1
RRBS
Assay category
53
DNA binding
2
DNA accessibility
1
DNA methylation
Target of assay
38
histone
38
histone modification
22
narrow histone mark
16
broad histone mark
13
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
55
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
32
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
55
bam
55
fastq
43
bigWig
30
bed narrowPeak
16
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
56
Homo sapiens
Biosample type
282
tissue
68
in vitro differentiated cells
56
primary cell
Organ
38
pancreas
26
epithelium
Project
56
AMP
Genome assembly (visualization)
44
hg19
39
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
DNase-seq
RRBS
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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