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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
ATAC-seq
56
snATAC-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
58
DNA accessibility
58
DNA methylation
53
DNA binding
10
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
95
May, 2022
79
May, 2021
76
February, 2023
56
September, 2020
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
8
January, 2021
8
June, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
535
bigWig
525
bam
377
fastq
258
tsv
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
632
Homo sapiens
Biosample type
1741
tissue
632
primary cell
241
in vitro differentiated cells
239
cell line
8
stem cell
Organ
251
epithelium
229
pancreas
22
connective tissue
16
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
275
HPAP
236
AMP
120
T1D
1
ITG
Genome assembly (visualization)
295
hg19
265
GRCh38
Lab
275
Klaus Kaestner, Upenn
231
AMP-T2D consortium
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
19
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
632 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
6
31
1
monocyte
54
1
1
1
pancreatic beta cell
21
12
6
16
1
exocrine cell
39
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