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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
24
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
Available data
67
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
91
Homo sapiens
Biosample type
78
tissue
13
primary cell
Organ
788
pancreas
765
liver
656
connective tissue
483
adipose tissue
415
epithelium
298
heart
280
brain
275
kidney
188
vasculature
183
blood vessel
147
bone element
113
limb
96
artery
91
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
22
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
69
hg19
52
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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