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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
5
Hi-C
ATAC-seq
3
ChIP-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
196
DNA accessibility
5
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
187
June, 2019
8
October, 2019
5
August, 2021
4
July, 2019
2
February, 2021
2
May, 2021
1
May, 2022
1
November, 2020
Available data
3217
bam
2993
bigWig
1586
tsv
1499
bed narrowPeak
fastq
1015
bigBed narrowPeak
398
tagAlign
320
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
158
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
210
Homo sapiens
Biosample type
168
tissue
37
primary cell
3
cell line
2
in vitro differentiated cells
Organ
78
kidney
36
limb
34
musculature of body
33
brain
30
heart
21
epithelium
18
ureter
13
vasculature
11
blood vessel
11
connective tissue
7
liver
6
pancreas
4
artery
4
eye
2
nerve
2
vein
1
adipose tissue
Project
210
AMP
Genome assembly (visualization)
199
GRCh38
187
hg19
Lab
206
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_title!
ATAC-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
210 results
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Clear Filters
DNase-seq
Hi-C
ChIP-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 37 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
cell line
Panc1
1
1
HepG2
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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