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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
145
Transcription
88
DNA binding
76
DNA accessibility
47
DNA methylation
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
95
May, 2022
47
September, 2023
45
February, 2021
40
September, 2020
19
April, 2020
16
January, 2021
7
February, 2023
4
March, 2023
3
March, 2020
Available data
114
zippedFastqFolder
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
67
fastq
6
tsv
hic
3
bedpe bed3+
3
cool
Organism
373
Homo sapiens
Biosample type
288
primary cell
79
tissue
9
cell line
2
stem cell
Organ
61
pancreas
49
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
180
HPAP
128
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
180
Klaus Kaestner, Upenn
124
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
3
inconsistent ontology term
assay_title!
ATAC-seq
total RNA-seq
files.file_type!
hic
award.project!
AMP
BIOSAMPLE
ASSAY
378 results
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single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
monocyte
84
1
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
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tissue
kidney
47
lung
9
10
islet of Langerhans
2
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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