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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
ATAC-seq
47
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
291
Transcription
76
DNA accessibility
47
DNA methylation
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
95
May, 2022
88
February, 2023
56
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
March, 2020
4
March, 2023
Available data
159
fastq
114
zippedFastqFolder
53
tsv
50
bam
50
bigWig
hic
3
bed narrowPeak
3
bedpe bed3+
3
cool
Organism
417
Homo sapiens
Biosample type
325
primary cell
85
tissue
10
cell line
2
stem cell
Organ
122
pancreas
103
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
272
HPAP
80
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
50
GRCh38
50
hg19
Lab
272
Klaus Kaestner, Upenn
73
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
7
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
7
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
hic
award.project!
AMP
month_released!
May, 2021
BIOSAMPLE
ASSAY
422 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
exocrine cell
39
pancreatic beta cell
11
16
peripheral blood mononuclear cell
8
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tissue
kidney
47
lung
9
10
islet of Langerhans
7
6
2
pancreas
4
cell line
EndoC_BH1
2
3
1
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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