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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
108
single cell RNA-seq
88
ChIP-seq
55
snATAC-seq
ATAC-seq
17
pCHi-C
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
309
Transcription
88
DNA binding
55
DNA accessibility
6
DNA methylation
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
May, 2022
88
February, 2023
56
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
March, 2020
4
March, 2023
Available data
186
bam
186
bigWig
159
fastq
104
tsv
88
bed narrowPeak
84
tagAlign
19
zippedFastqFolder
hic
3
bedpe bed3+
3
cool
Organism
475
Homo sapiens
Biosample type
381
primary cell
86
tissue
11
cell line
2
stem cell
Organ
82
pancreas
63
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
233
T1D
177
HPAP
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
225
Kyle Gaulton, UCSD
177
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
9
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
hic
award.project!
AMP
month_released!
May, 2022
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
WGBS
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
52
27
pancreatic alpha cell
42
6
exocrine cell
39
pancreatic beta cell
11
+ See 35 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
7
2
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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