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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
ATAC-seq
47
WGBS
44
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
76
DNA accessibility
47
DNA methylation
44
DNA binding
Target of assay
88
histone
88
histone modification
broad histone mark
44
narrow histone mark
Date released
109
May, 2021
95
May, 2022
88
February, 2023
56
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
March, 2020
4
March, 2023
Available data
159
fastq
142
bam
142
bigWig
114
zippedFastqFolder
104
tsv
44
bed narrowPeak
40
tagAlign
hic
3
bedpe bed3+
3
cool
Organism
526
Homo sapiens
Biosample type
432
primary cell
86
tissue
11
cell line
2
stem cell
Organ
123
pancreas
104
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
272
HPAP
189
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
142
GRCh38
142
hg19
Lab
272
Klaus Kaestner, Upenn
181
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
9
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
hic
award.project!
AMP
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
531 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
monocyte
53
40
1
pancreatic alpha cell
42
31
exocrine cell
39
pancreatic beta cell
11
16
+ See 35 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
7
6
2
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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