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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
110
total RNA-seq
ATAC-seq
17
pCHi-C
16
snATAC-seq
Assay category
154
DNA binding
110
Transcription
16
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
230
May, 2021
45
May, 2020
16
January, 2021
February, 2023
6
May, 2022
Available data
215
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
297
Homo sapiens
Biosample type
239
primary cell
42
in vitro differentiated cells
16
tissue
Organ
15
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
213
T1D
84
AMP
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
3539
AMP-T2D consortium
297
Kyle Gaulton, UCSD
196
Klaus Kaestner, Upenn
66
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
35
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
hic
month_released!
February, 2023
BIOSAMPLE
ASSAY
297 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
6
4
pancreas
1
4
thymus
1
See all biosamples
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